分子夾雑の生命化学

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原著論文2

[すべて] [A01の成果] [A02の成果] [A03の成果] 

  1. Matsuura K., Synthetic Approaches to Construct Viral Capsid-like Spherical Nanomaterials, Chem. Commun., 2018, 54, 8944-8959. DOI: 10.1039/C8CC03844A Tags: 松浦 A02
  2. Inaba H.; Matsuura K., Peptide Nanomaterials Designed from Natural Supramolecular Systems, Chem. Rec., 2018, 18, 1-17.
    DOI: 10.1002/tcr.201800149
    Tags: 松浦 A02
  3. Zhu. H.; Tamura. T.; Hamachi. I., Chemical Proteomics for Subcellular Proteome Analysis, Curr. Opin. Chem. Biol., 2018, 48:1-7, DOI:10.1016/j.cbpa.2018.08.001. Tags: 浜地 A01
  4. Kubota. R.; Nomura. W.; Iwasaka. T.; Ojima. K.; Kiyonaka. S.; Hamachi. I., A Chemogenetic Approach Using Ni(II) Complex-Agonist Conjugates Allows to Selectively Activate Class A G Protein-Coupled Receptors, ACS Central Science, 2018,4 (9), pp 1211–1221. DOI:10.1021/acscentsci.8b00390 Tags: 浜地 A01
  5. Zhao. C.; Song, H.; Scott. P.; Zhao, A.; Tateishi-Karimata. H.; Sugimoto. N.; Ren. J.; Qu. X., Mirror-image Dependence: Targeting Enantiomeric G-quadruplex DNA by 10 Pairs of Triplex Metallohelices, Angew. Chem. Int. Ed., 2018, 57, 15723-15727 DOI: 10.1002/ange.201809207 Tags: 杉本A02
  6. Teng. Y.; Tateishi-Karimata. H.; Tsuruoka. T.; Sugimoto. N., A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid, N., Molecules, 23, 2889(2018) DOI: 10.3390/molecules23112889 Tags: 杉本A02
  7. Teng. Y.; Tateishi-Karimata. H.; Sugimoto. and N., C-rich sequence in a non-template DNA strand regulates structure change of G-quadruplex in a template strand during transcription, , Bull. Chem. Soc. Jpn., 92 572-577(2019)
    DOI: 10.1246/bcsj.20180298
    Tags: 杉本A02
  8. Terakawa. M. S.; Lee. Y.-H.; Kinoshita. M.; Lin. Y. ; Sugiki. T.; Fukui. N.; Ikenoue. T.; Kawata. Y.; Goto. Y., Membrane-induced initial structure of α-synuclein control its amyloidogenesis on model membranes, BBA; Biomembranes, 1860, 757-766 (2018) Tags: 河田A02
  9. Mizobata. T.; Kawata. Y.,The versatile mutational “repertoire” of E. coli GroEL, a multi-component chaperonin nanomachine, Biophysical Review, 10 (2), 631-640 (2018) Tags: 河田A02
  10. Azuma. Y.; Imai. H.; Kawaguchi. Y.; Nakase. I.; Kimura. H., Futaki. S., Modular Redesign of a Cationic Lytic Peptide to Promote the Endosomal Escape of Biomacromolecules, Angew. Chem. Int. Ed. Eng., 57(39), 12771–12774 (2018)
    Tags: 二木A01
  11. Keine Nishiyama, Kanako Sugimura, Noritada Kaji, Manabu Tokeshi, Yoshinobu Baba Development of a Microdevice for Facile Analysis of Theophylline in Whole Blood by a Cloned Enzyme Donor Immunoassay Lab Chip, 2019, 19, 233-240.
    Tags: 馬場 A03
  12. Sato. S.; Tsuchima. M.; Nakamura.H., Target-Protein-Selective Inactivation and Labelling Using Oxidative Catalyst. Org. Biomol. Chem. 16, 6168 – 6179 (2018). DOI: 10.1039/C8OB01484A
    Tags: 中村 A01
  13. Lin, M.I., Hiyama, A., Kondo, K., Nagata, T. and Katahira, M. (2018) Appl. Microbiol. Biotech., 102, 9635-9645. “Classification of fungal glucuronoyl esterases (FGEs), and characterization of two new FGEs from Ceriporiopsis subvermispora and Pleurotus eryngii
    Tags: 片平 A02
  14. Masoud, S.S., Yamaoki, Y., Ma, Y., Marchand, A., Winnerdy, F.R., Gabelica, V., Phan, A.T., Katahira, M. and Nagasawa, K. (2018) ChemBioChem., 19, 2268-2272. “Analysis of interaction between telomeric i-motif DNA and a cyclic tetraoxazole compound”
    Tags: 片平 A02
  15. Ohara, Y., Ozeki, Y., Tateishi, Y., Mashima, T., Arisaka, F., Tsunaka, Y., Fujiwara, Y., Nishiyama, A., Yoshida, Y., Kitadokoro, K., Kobayashi, H., Kaneko, Y., Najagawa, I., Maekura, R., Ya,mamoto, S., Katahira, M. and Matsumoto, S. (2018) PLoS ONE, 13, e0204160. “Significance of a histone-like protein with its native structure for the diagnosis of asymptomatic tuberculosis”
    Tags: 片平 A02
  16. Chen, Z., Tonouchi, Y., Matsumoto, K., Saimura, M., Atkin, R., Nagata, T., Katahira, M. and Hagiwara, R. (2018) J. Phys. Chem. Lett., 9, 6662-6667. “Partially naked fluoride in solvate ionic liquids”
    Tags: 片平 A02
  17. Tokunaga, Y., Nagata, T., Suetomi, T., Oshiro, S., Kondo, K., Katahira, M. and Watanabe, T. “NMR analysis of molecular interaction of lignin with amino acid residues of carbohydrate-binding module from Trichoderma reesei Cel7A” (2019) Sci. Rep.9:1977
    DOI: 10.1038/s41598-018-38410-9
    Tags: 片平 A02
  18. Wan Osman, W. H., Mikami, B., Saka, N., Kondo, K., Nagata, T. and Katahira, M. “Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis” (2019) Biochem. Biophys. Res. Commun.510(1):177-183.
    DOI: 10.1016/j.bbrc.2019.01.076.
    Tags: 片平 A02
  19. Sheng. Y.; Watanabe. H.; Maruyama. K.; Watanabe. C.; Okiyama. Y.; Honma. T.; Fukuzawa. K.; Tanaka. S., Towards Good Correlation between Fragment Molecular Orbital Interaction Energies and Experimental IC50 for Ligand Binding: A Case Study of p38 MAP Kinase, (2018) Comput. Struct. Biotech. J., 16, 421-434. 
    Tags: 田中 A02
  20. Shimamura. K.; Shimojo. F.; Nakano. A.; Tanaka. S., Ab Initio Molecular Dynamics Study of Prebiotic Production Processes of Organic Compounds at Meteorite Impacts on Ocean, (2019)J. Comput. Chem., 40, 349-359.
    Tags: 田中 A02
  21. Valgepea. K.; de Souza Pinto Lemgruber. R.; Abdalla. T.; Binos. S.; Takemori. N.; Takemori. A.; Tanaka. Y.; Tappel. R.; Köpke. M.; Simpson. SD.; Nielsen. LK.; Marcellin. E., H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum. Biotechnol Biofuels. 2018 11:55. doi: 10.1186/s13068-018-1052-9.
    Tags: 武森 A03

  22. Suzuki. J.; Yamada. T.; Inoue. K.; Nabe. S.; Kuwahara. M.; Takemori. N.; Takemori. A.; Matsuda. S.; Kanoh. M.; Imai. Y.; Yasukawa. M.; Yamashita. M., The tumor suppressor menin prevents effector CD8 T-cell dysfunction by targeting mTORC1-dependent metabolic activation. Nat Commun. 2018 9(1):3296. doi: 10.1038/s41467-018-05854-6.
    Tags: 武森 A03

  23. Takahashi. S.; Chelobanov. B.; Kim. K. T.; Kim. B. H.; Stetsenko. D.; Sugimoto. N.,Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes, Molecules, 23, 3228,2018
    Tags: 杉本A02
  24. S. Takahashi, J. Yamamoto, A. Kitamura, M. Masataka, and N. Sugimoto, Characterization of intracellular crowding environments with topology-based DNA quadruplex sensors, Anal. Chem., 91(4):2586-2590 (2019)
    DOI: 10.1021/acs.analchem.8b04177
    Tags: 杉本A02
  25. S. Takahashi, H. Okura, and N. Sugimoto, Bisubstrate function of RNA polymerases triggered by molecular crowding conditions, Biochemistry, 58, (8), pp 1081–1093  (2019)
    DOI: 10.1021/acs.biochem.8b01204
    Tags: 杉本A02
  26. S. Bhowmik, S. Takahashi, and N. Sugimoto, Lighting up of thiazole orange on G-quadruplex DNA by high pressure, ACS Omega, 4(2), pp 4325–4329 (2019)
    DOI: 10.1021/acsomega.8b03430
    Tags: 杉本A02
  27. T. Endoh, T. Ohyama, and N. Sugimoto, RNA-capturing microsphere particles (R-CAMPs) for optimization of functional aptamers, Small, 15 (2019) 1805062  
    DOI: 10.1002/smll.1805062
    Tags: 杉本A02
  28. 大山達也, 建石寿枝, 田中成典, 杉本直己, テトラエチレングリコールで修飾されたグアニン四重鎖の安定性の分子動力学計算による解析, 日本核酸化学会誌, 2018, 2, 3–10
    Tags: 杉本A02
  29. Moriizumi Y, Tabata KV, Watanabe R, Doura T, Kamiya M, Urano Y, Noji H. Hybrid cell reactor system from Escherichia coli protoplast cells and arrayed lipid bilayer chamber device. Sci Rep. 2018Aug 6;8(1):11757. 
    DOI:10.1038/s41598-018-30231-0
    Tags:田端A03

  30. Moriizumi Y, Tabata KV, Miyoshi D, Noji H. Osmolyte-Enhanced Protein Synthesis Activity of a Reconstituted Translation System. ACS Synth Biol.2019Feb 14. doi: 10.1021/acssynbio.8b00513. 
    DOI:10.1021/acssynbio.8b00513
    Tags: 田端A03

  31. Tabata KV, Sogo T, Moriizumi Y, Noji H. Regeneration of Escherichia coli giant protoplasts to their original form. Life(Basel). 2019Mar 1;9(1). 
    DOI:10.3390/life9010024
    Tags: 田端A03

  32. Fujisawa, A.; Tamura, T.; Yasueda, Y.; Kuwata, K.; Hamachi, I., Chemical profiling of the endoplasmic reticulum proteome using designer labeling reagents. J. Am. Chem Soc. 2018, 140, 17060-17070, doi:10.1021/jacs.8b0860
    Tag: 浜地A01

  33. Tamura, T.; Hamachi, I., Chemistry for Covalent Modification of Endogenous/Native Proteins: From Test Tubes to Complex Biological Systems. J. Am. Chem. Soc., 2019, 141, 2782–2799, DOI:10.1021/jacs.8b11747
    Tags: 浜地 A01

  34. Sakamoto, S.; Kiyonaka, S.; Hamachi, I., Construction of ligand assay systems by protein-based semisynthetic biosensors. Curr. Opin. Chem. Biol., 2019, 50, 10–18, DOI:10.1016/j.cbpa.2019.02.011
    Tags: 浜地 A01

  35. Sakamoto, S.; Hamachi, I., Recent Progress in Chemical Modification of Proteins. Analytical Sciences. Anal. Sci., 2019, 35, 5–27, DOI:10.2116/analsci.18R003
    Tags: 浜地 A01

  36. R. Sakai, H. Iguchi, T. Maruyama, Quantification of azide groups on a material surface and a biomolecule using a clickable and cleavable fluorescent compound. RSC Adv. 9, 4621-4625 (2019).  Tags: 丸山A01

  37. M. Hara, S. Kitahata, K. Nishimori, K. Miyahara, K. Tokuda, T. Nishino, T. Maruyama, Surface-functionalization of isotactic polypropylene via dip-coating with a methacrylate-based terpolymer containing perfluoroalkyl groups and poly(ethylene glycol). Polymer J. 51, 489-499 (2019). Tags: 丸山A01
  38. Suzuki, R., Sakakura, M., Mori, M., Fujii, M., Akashi, S., Takahashi, H. Methyl-selective isotope labeling using α-ketoisovalerate for the yeast Pichia pastoris recombinant protein expression system. J. Biomol. NMR, 71(4), 213-223 (2018).
    Tags: 明石A02
  39. Hyodo, F., Sho, T., Basudev, M., Fujita, K., Tachibana, Y., Akashi, S., Mano, M., Hishikawa, Y., Matsuo, M., Nakaji, T., Ueno, T. Photo-induced in Vivo MRI Imaging with Rapid CO Release from an MnCO-Protein Needle Composite. Chemistry. Eur. J., 24 (45), 11578-11583 (2018).
    Tags: 明石A02
  40. Tamura, R., Oi, R., Akashi, S., Kaneko, M.K., Kato, Y., Nogi, T. Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins. Protein Sci. 28(4), 823-836 (2019).
    Tags: 明石A02
  41. Hall, D.; Kinjo, A.; Goto, Y., A new look at an old view of denaturant induced protein unfolding. Anal. Biochem., 2018, 542, 40-57 DOI: 10.1016/j.ab.2017.11.011.
    Tags. 後藤 A02
  42. Adachi, M.; Noji, M.; So, M.; Sasahara, K.; Kardos, J.; Naiki, H.; Goto, Y. Aggregation-phase diagrams of β2-microglobulin reveal temperature and salt effects on competitive formation of amyloids versus amorphous aggregates. J. Biol. Chem., 2018, 293, 14775-14785. DOI: 10.1074/jbc.RA118.004683.
    Tags. 後藤 A02
  43. Noji, M.; So, M.; Yamaguchi, K.; Hojo, H.; Onda, .M.; Akazawa-Ogawa, Y.; Hagihara, Y.; Goto, Y. Heat-induced aggregation of hen ovalbumin suggests a key factor responsible for serpin polymerization. Biochemistry, 2018, 57, 5415-5426. DOI: 10.1021/acs.biochem.8b00619.
    Tags. 後藤 A02
  44. Kakuda, K.; Ikenaka, K.; Araki, K.; So, M.; Aguirre, C.; Kajiyama, Y.; Konaka, K.; Noi, K.; Baba, K.; Tsuda, H.; Nagano, S.; Ohmichi, T.; Nagai, Y.; Tokuda, T.; El-Agnaf, O.; Ogi, H.; Goto, Y.; Mochizuki, H. Ultrasonication-based rapid amplification of α-synuclein aggregates in cerebrospinal fluid. Scientific Reports, 2019, 9, 6001 DOI: 10.1038/s41598-019-42399-0.
    Tags. 後藤 A02